miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|71689980|gb|DR920617.1|DR920617 CCAACTCACTCGTTCATCTTCCCCAAACACTCACATCACCATGTCTTCATCATCATCATCATCTTCATCTTATGATCTAT
CTTCCTTCAAATTTGAACCAATTAAGGAATCCATTGTATCACGTGAGATGACTCGCAGATACATGATGGATATGATTACA
TATGCTGACACTGATGTTGTTGTTGTTGGAGCAGGTTCAGCAGGTCTTTCTTGTGCTTATGAAATGAGCAAAAACCCTAA
CATCAACATCGCTATTATCGAACAATCTGTCAGTCCTGGTGGTGGTGCTTGGTTAGGTGGTCAGCTTTTTTCTGCCATGG
TTGTTCGCAAACCTGCTCACATCTTCCTTGATGAACTCGGTGTTGAATACGATGAACAAGACACCTATGTTGTTATCAAG
CACGCTGCCTTGTTTACATCCACAATCATGTCTAAGCTTTTGGCTAAACCAAATGTGAAACTTTTTAATGCTGTTGCTGC
TGAGGATTTGATCGTGAAAGAAGGTAAAGTTGCTGGGGTTGTCACAAATTGGGCTTTGGTTTCTATGAATCATGATACAC
AATCATGTATGGATCCAAATGTAATGGAAGCTAAGATTGTTGTCAGTTCTTGTGGCCATGATGGTCCTTTTGGTGCTACT
GGTGTGAAGAGGCTGAAGAGCATTGGAATGATTGATTCTGTTCCTGGTATGAAAGCTCTTGATATGAATACTGCTGAGGA
TGCTATTGTCAGATTGACAAGAGAAATT




Most similar to sp|O23787|THI4_CITSI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic
           OS=Citrus sinensis GN=THI1 PE=2 SV=1
          Length = 356

 Score =  406 bits (1044), Expect = e-113
 Identities = 201/221 (90%), Positives = 211/221 (95%)
 Frame = +2

Query: 86  FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINIAIIEQ 265
           FKF+PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SKNPNI IAIIEQ
Sbjct: 63  FKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ 122

Query: 266 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLLA 445
           SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG++YDEQD YVVIKHAALFTSTIMSKLLA
Sbjct: 123 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA 182

Query: 446 KPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 625
           +PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDG
Sbjct: 183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242

Query: 626 PFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREI 748
           PFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+
Sbjct: 243 PFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV 283